Slot: seqcol_digest¶

Top-level sequence collection digest according to the GA4GH refget, Sequence Collections standard (v1.0). This a globally unique identifier for the genome assembly, algorithmically derivable from the genome assembly content. Usage is to uniquely identify the exact genome assembly used and allow detailed comparisons across genome assembly variants (say, variants of the GRCh38 assembly).

URI: https://w3id.org/fga-wg/schema/bundle/seqcol_digest

Applicable Classes¶

Name	Description	Modifies Slot
GenomeAssembly	Information about of the exact genome assembly used to generate the annotation file, defining the genomic coordinate system for the sequence features.	no

Properties¶

Type and Range¶

Property	Value
Range	Curie
Domain Of	GenomeAssembly

Cardinality and Requirements¶

Property	Value
Required	Yes
### Slot Characteristics

Property	Value
Identifier	Yes

Examples¶

Value
ga4gh:SC.EiFob05aCWgVU_B_Ae0cypnQut3cxUP1

Identifier and Mapping Information¶

Schema Source¶

from schema: https://w3id.org/fga-wg/schema/bundle

Mappings¶

Mapping Type	Mapped Value
self	https://w3id.org/fga-wg/schema/bundle/seqcol_digest
native	https://w3id.org/fga-wg/schema/bundle/seqcol_digest

LinkML Source¶

name: seqcol_digest
description: Top-level sequence collection digest according to the GA4GH refget, Sequence
  Collections standard (v1.0). This a globally unique identifier for the genome assembly,
  algorithmically derivable from the genome assembly content. Usage is to uniquely
  identify the exact genome assembly used and allow detailed comparisons across genome
  assembly variants (say, variants of the GRCh38 assembly).
examples:
- value: ga4gh:SC.EiFob05aCWgVU_B_Ae0cypnQut3cxUP1
from_schema: https://w3id.org/fga-wg/schema/bundle
rank: 1000
identifier: true
domain_of:
- GenomeAssembly
range: curie
required: true