Slot: quality_assessments
An array of QualityAssessment objects containing the main quality scores from assessment techniques applied to the data file.
URI: https://w3id.org/fga-wg/schema/bundle/quality_assessments
Applicable Classes
| Name |
Description |
Modifies Slot |
| File |
General information about a particular data file. Most fields (marked with an asterix*) are copied from the GA4GH DRS DrsObject model (https://ga4gh.github.io/data-repository-service-schemas/preview/release/drs-1.4.0/docs/#tag/DrsObjectModel), which is the top-level object returned from a DRS server in response to a successful lookup call (i.e. https://ga4gh.github.io/data-repository-service-schemas/preview/release/drs-1.4.0/docs/#tag/Objects). |
no |
| GenomicAnnotationFile |
Information about a genomic annotation / track file. GenomicAnnotationFile is a specification of the File entity and inherits all the fields defined in File, in addition to the fields that are specific to GenomicAnnotationFile, as detailed here. |
no |
Properties
Type and Range
Cardinality and Requirements
| Property |
Value |
| Multivalued |
Yes |
Examples
Schema Source
- from schema: https://w3id.org/fga-wg/schema/bundle
Mappings
| Mapping Type |
Mapped Value |
| self |
https://w3id.org/fga-wg/schema/bundle/quality_assessments |
| native |
https://w3id.org/fga-wg/schema/bundle/quality_assessments |
LinkML Source
name: quality_assessments
description: An array of QualityAssessment objects containing the main quality scores
from assessment techniques applied to the data file.
examples:
- object:
assessment_method: histone-chipseq-quality-metrics
assessment_values:
nreads: 21018235
nreads_in_peaks: 6161851
frip: 0.2931669095906483
assessment_details_url: https://www.encodeproject.org/histone-chipseq-quality-metrics/70ae08dc-3edc-437f-a0a5-378c72e6269b/
from_schema: https://w3id.org/fga-wg/schema/bundle
rank: 1000
domain_of:
- File
range: QualityAssessment
multivalued: true