Class: QualityAssessment

Represents the results of a quality assessment that has been carried out on a data file resulting from an experiment or analysis.

URI: https://w3id.org/fga-wg/schema/bundle/QualityAssessment

 classDiagram
    class QualityAssessment
    click QualityAssessment href "../QualityAssessment/"
      QualityAssessment : assessment_details_url

      QualityAssessment : assessment_method





        QualityAssessment --> "1" Any : assessment_method
        click Any href "../Any/"



      QualityAssessment : assessment_values





        QualityAssessment --> "1" Any : assessment_values
        click Any href "../Any/"

Example

Example JSON

{
  "assessment_details_url": "https://www.encodeproject.org/histone-chipseq-quality-metrics/70ae08dc-3edc-437f-a0a5-378c72e6269b/",
  "assessment_method": "histone-chipseq-quality-metrics",
  "assessment_values": {
    "frip": 0.2931669095906483,
    "nreads": 21018235,
    "nreads_in_peaks": 6161851
  }
}

Slots

Name	Cardinality and Range	Description	Inheritance
assessment_method	1 Any or  String or  Term	Quality assessment method that has been carried out (e.g. BUSCO, OMArk, peak calling statistics, etc.)	direct
assessment_values	1 Any or  String or  AssessmentValue	Main values produced by the quality assessment.	direct
assessment_details_url	0..1 Uri	URL to a report containing the detailed output from the quality assessment.	direct

Usages

used by	used in	type	used
File	quality_assessments	range	QualityAssessment
GenomicAnnotationFile	quality_assessments	range	QualityAssessment

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/fga-wg/schema/bundle

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/fga-wg/schema/bundle/QualityAssessment
native	https://w3id.org/fga-wg/schema/bundle/QualityAssessment

LinkML Source

Direct

name: QualityAssessment
description: Represents the results of a quality assessment that has been carried
  out on a data file resulting from an experiment or analysis.
from_schema: https://w3id.org/fga-wg/schema/bundle
slots:
- assessment_method
- assessment_values
- assessment_details_url

Induced

name: QualityAssessment
description: Represents the results of a quality assessment that has been carried
  out on a data file resulting from an experiment or analysis.
from_schema: https://w3id.org/fga-wg/schema/bundle
attributes:
  assessment_method:
    name: assessment_method
    description: Quality assessment method that has been carried out (e.g. BUSCO,
      OMArk, peak calling statistics, etc.)
    examples:
    - value: histone-chipseq-quality-metrics
    from_schema: https://w3id.org/fga-wg/schema/bundle
    rank: 1000
    owner: QualityAssessment
    domain_of:
    - QualityAssessment
    range: Any
    required: true
    any_of:
    - range: string
    - range: Term
  assessment_values:
    name: assessment_values
    description: Main values produced by the quality assessment.
    examples:
    - object:
        nreads: 21018235
        nreads_in_peaks: 6161851
        frip: 0.2931669095906483
    from_schema: https://w3id.org/fga-wg/schema/bundle
    rank: 1000
    owner: QualityAssessment
    domain_of:
    - QualityAssessment
    range: Any
    required: true
    any_of:
    - range: string
    - range: AssessmentValue
      multivalued: true
      inlined: true
      inlined_as_list: false
  assessment_details_url:
    name: assessment_details_url
    description: URL to a report containing the detailed output from the quality assessment.
    examples:
    - value: https://www.encodeproject.org/histone-chipseq-quality-metrics/70ae08dc-3edc-437f-a0a5-378c72e6269b/
    from_schema: https://w3id.org/fga-wg/schema/bundle
    rank: 1000
    owner: QualityAssessment
    domain_of:
    - QualityAssessment
    range: uri