Slot: genome_assembly¶

Information about the genome assembly used to generate the genomic annotation file, consequently defining the genomic coordinate system for the annotation.

URI: https://w3id.org/fga-wg/schema/bundle/genome_assembly

Applicable Classes¶

Name	Description	Modifies Slot
GenomicAnnotationFile	Information about a genomic annotation / track file. GenomicAnnotationFile is a specification of the File entity and inherits all the fields defined in File, in addition to the fields that are specific to GenomicAnnotationFile, as detailed here.	no

Properties¶

Type and Range¶

Property	Value
Range	GenomeAssembly
Domain Of	GenomicAnnotationFile

Cardinality and Requirements¶

Property	Value
Required	Yes

Examples¶

Value
ga4gh:SC.EiFob05aCWgVU_B_Ae0cypnQut3cxUP1

Identifier and Mapping Information¶

Schema Source¶

from schema: https://w3id.org/fga-wg/schema/bundle

Mappings¶

Mapping Type	Mapped Value
self	https://w3id.org/fga-wg/schema/bundle/genome_assembly
native	https://w3id.org/fga-wg/schema/bundle/genome_assembly

LinkML Source¶

name: genome_assembly
description: Information about the genome assembly used to generate the genomic annotation
  file, consequently defining the genomic coordinate system for the annotation.
examples:
- value: ga4gh:SC.EiFob05aCWgVU_B_Ae0cypnQut3cxUP1
from_schema: https://w3id.org/fga-wg/schema/bundle
rank: 1000
domain_of:
- GenomicAnnotationFile
range: GenomeAssembly
required: true