Class: Term¶

_Helper entity to represent an ontology term as a data value. _

URI: https://w3id.org/fga-wg/schema/bundle/Term

 classDiagram
    class Term
    click Term href "../Term/"
      Term : id

      Term : label

Example¶

Example JSON

{
  "id": "obi:OBI_0000716",
  "label": "ChIP-seq assay"
}

Slots¶

Name	Cardinality and Range	Description	Inheritance
id	1 Curie	External, globally unique identifier for the ontology term (in CURIE form).	direct
label	0..1 String	Human-readable label associated to the term id in the current version of the ontology (as listed in the "ontology_versions" field of the Deposit object).	direct

Usages¶

used by	used in	type	used
Analysis	analysis_type	range	Term
Donor	species_taxon	range	Term
Donor	sex	range	Term
Experiment	molecule_type	range	Term
Experiment	assay_type	range	Term
Experiment	library_layout	range	Term
Experiment	instrument	range	Term
Experiment	antibody_target	range	Term
Experiment	biological_processes	range	Term
File	file_type	range	Term
QualityAssessment	assessment_method	any_of[range]	Term
GenomicAnnotationFile	sequence_features	range	Term
GenomicAnnotationFile	file_type	range	Term
Sample	organism_tissue	range	Term
Sample	cell_type	range	Term
Sample	cell_line	range	Term
Sample	other_biospecimen	range	Term
Sample	phenotype	range	Term
Sample	donor_development_stage	range	Term

Identifier and Mapping Information¶

Schema Source¶

from schema: https://w3id.org/fga-wg/schema/bundle

Mappings¶

Mapping Type	Mapped Value
self	https://w3id.org/fga-wg/schema/bundle/Term
native	https://w3id.org/fga-wg/schema/bundle/Term

LinkML Source¶

Direct¶

name: Term
description: 'Helper entity to represent an ontology term as a data value. '
from_schema: https://w3id.org/fga-wg/schema/bundle
slots:
- id
- label

Induced¶

name: Term
description: 'Helper entity to represent an ontology term as a data value. '
from_schema: https://w3id.org/fga-wg/schema/bundle
attributes:
  id:
    name: id
    description: External, globally unique identifier for the ontology term (in CURIE
      form).
    examples:
    - value: obi:OBI_0000716
    from_schema: https://w3id.org/fga-wg/schema/bundle
    rank: 1000
    owner: Term
    domain_of:
    - Term
    range: curie
    required: true
  label:
    name: label
    description: Human-readable label associated to the term id in the current version
      of the ontology (as listed in the "ontology_versions" field of the Deposit object).
    examples:
    - value: ChIP-seq assay
    from_schema: https://w3id.org/fga-wg/schema/bundle
    rank: 1000
    owner: Term
    domain_of:
    - Term
    range: string