Class: Donor

Information about the donor or complete organism from which the sample was taken.

URI: https://w3id.org/fga-wg/schema/bundle/Donor

 classDiagram
    class Donor
    click Donor href "../Donor/"
      Donor : donor_external_id

      Donor : donor_id

      Donor : sex





        Donor --> "0..1" Term : sex
        click Term href "../Term/"



      Donor : species_taxon





        Donor --> "1" Term : species_taxon
        click Term href "../Term/"

Example

Example JSON

{
  "donor_external_id": "biosamples:SAMN04284578",
  "donor_id": "donor:ENCDO001AAA",
  "sex": {
    "id": "CARO:0000027",
    "label": "male organism"
  },
  "species_taxon": {
    "id": "NCBITaxon:9606",
    "label": "Homo sapiens"
  }
}

Slots

Name	Cardinality and Range	Description	Inheritance
donor_external_id	0..1 Curie	External, globally unique identifier for the donor/organism.	direct
donor_id	1 Curie	Internal identifier for the donor/organism (unique within the metadata deposit).	direct
species_taxon	1 Term	Taxonomical classification of the species of the donor/organism.	direct
sex	0..1 Term	Biological sex of the donor/organism.	direct

Usages

used by	used in	type	used
Bundle	donors	range	Donor

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/fga-wg/schema/bundle

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/fga-wg/schema/bundle/Donor
native	https://w3id.org/fga-wg/schema/bundle/Donor

LinkML Source

Direct

name: Donor
description: Information about the donor or complete organism from which the sample
  was taken.
from_schema: https://w3id.org/fga-wg/schema/bundle
slots:
- donor_external_id
- donor_id
- species_taxon
- sex

Induced

name: Donor
description: Information about the donor or complete organism from which the sample
  was taken.
from_schema: https://w3id.org/fga-wg/schema/bundle
attributes:
  donor_external_id:
    name: donor_external_id
    description: External, globally unique identifier for the donor/organism.
    examples:
    - value: biosamples:SAMN04284578
    from_schema: https://w3id.org/fga-wg/schema/bundle
    rank: 1000
    owner: Donor
    domain_of:
    - Donor
    range: curie
  donor_id:
    name: donor_id
    description: 'Internal identifier for the donor/organism (unique within the metadata
      deposit). '
    examples:
    - value: donor:ENCDO001AAA
    from_schema: https://w3id.org/fga-wg/schema/bundle
    rank: 1000
    identifier: true
    owner: Donor
    domain_of:
    - Donor
    range: curie
    required: true
  species_taxon:
    name: species_taxon
    description: Taxonomical classification of the species of the donor/organism.
    examples:
    - object:
        id: NCBITaxon:9606
        label: Homo sapiens
    from_schema: https://w3id.org/fga-wg/schema/bundle
    rank: 1000
    owner: Donor
    domain_of:
    - Donor
    range: Term
    required: true
  sex:
    name: sex
    description: Biological sex of the donor/organism.
    examples:
    - object:
        id: CARO:0000027
        label: male organism
    from_schema: https://w3id.org/fga-wg/schema/bundle
    rank: 1000
    owner: Donor
    domain_of:
    - Donor
    range: Term